Function reference • HaplinMethyl

About

HaplinMethyl: HaplinMethyl: Additional functions for Haplin, for using matrices of environmental data (e.g., DNA methylation data)

Data input and preparation

envDataCategorize(): Creating categorical variables out of continuous data

envDataLoad(): Loading the data previously read in and saved by "envDataRead"

envDataRead(): Reading the environmental data from a file.

envDataReadFromObj(): Reading the environmental data from an object.

envDataSubset(): Subsetting the environmental data

findCpGsRange(): Finding CpGs within a given range

findCpGsnearSNP(): Finding CpGs near a SNP

Summary and data extraction

summary(<env.cat>): Info about the env.cat class

summary(<env.cont>): Info about the env.cont class

print(<env.cat>): Info about the env.cat class

print(<env.cont>): Info about the env.cont class

nrows() ncolumns(): Number of rows/columns of env.data

showRaw(): Show raw environmental data

Analysis

addCovar(): Adding a covariate variable